Thomas C. Jenkins Department of Biophysics110 Jenkins Hall 3400 N. Charles Street Baltimore, MD 21218
Dr. Bertrand Garcia-Moreno E. Department Chair
410-516-7245 phone 410-516-4118 fax
Dr. Patrick Fleming
Johns Hopkins University
Dept. of Biophysics
3400 North Charles Street
Baltimore, MD 21218
_|\ \<, ._ o
....|.....( )/( )...../ //\.
REDUX Torsion angle Monte Carlo protein molecular simulations
Conditional Hydrophic Surface Area (CHASA) Calculate hydrophobic surface area conditional upon protein polor group solvation. Also calculates hydrogen bond satisfaction.
Occluded Surface (OS) Calculate protein packing and interaction complementarity.
Difference Distance Matrix Plot (DDMP) Compare C-alpha positions between two proteins.
Coordcomp Cartesian all atom coordinate comparison for two similar proteins.
© The Johns Hopkins University. All rights reserved.